Transcript: lnc-SETD6-6:1

Basic information

LNCipedia transcript ID: lnc-SETD6-6:1 
LNCipedia gene ID: lnc-SETD6-6
Location (hg19): chr16:61501281-61502791
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 249 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024429; NONHSAT142917
Alternative gene names: XLOC_011746; linc-CDH5-9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -245.657 non-coding 
CPAT coding probability 0.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SETD6-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SETD6-5:1
3.1 lnc-SETD6-6:1
4.0 lnc-SETD6-6:1
4.1 lnc-SETD6-6:1
5.0 lnc-SETD6-6:1
5.1 lnc-ADGRG1-90:2
5.2 lnc-SETD6-6:1