Transcript: lnc-SETSIP-2:10

Basic information

LNCipedia transcript ID: lnc-SETSIP-2:10 
LNCipedia gene ID: lnc-SETSIP-2
Location (hg19): chr1:92486869-92495944
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 6698 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000066476.1|MICT00000015129.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 52.018 non-coding 
CPAT coding probability 16.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SETSIP-2:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TGFBR3-2:5
5.0 lnc-TGFBR3-2:5
5.1 lnc-SETSIP-2:2
5.2 lnc-SETSIP-2:10