Transcript: lnc-SEZ6L2-1:1

Basic information

LNCipedia transcript ID: lnc-SEZ6L2-1:1 
LNCipedia gene ID: lnc-SEZ6L2-1
Location (hg19): chr16:29930957-29933226
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2270 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000567795.1; CTD-2574D22.4-001; OTTHUMT00000435617.1; NONHSAT141667
Alternative gene names: ENSG00000260114.1; CTD-2574D22.4; OTTHUMG00000177147.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -29.5535 non-coding 
CPAT coding probability 6.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEZ6L2-1:1 no no no no

Available literature

  1. Xing (2014), Identification of long noncoding RNA associated with osteoarthritis in humans., Orthop Surg


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SEZ6L2-1:1
4.0 lnc-SEZ6L2-1:1
4.1 lnc-SEZ6L2-1:1
5.0 lnc-SEZ6L2-1:1
5.1 lnc-SULT1A2-53:1
5.2 lnc-SEZ6L2-1:1