Transcript: lnc-SEZ6L2-1:2

Basic information

LNCipedia transcript ID: lnc-SEZ6L2-1:2 
LNCipedia gene ID: lnc-SEZ6L2-1
Ensembl Gene ID: ENSG00000260114
Ensembl Transcript ID: ENST00000567795
Location (hg19): chr16:29930955-29933226
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2272 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000567795.2
Alternative gene names: ENSG00000260114.2; CTD-2574D22.4; AC120114.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -29.5535 non-coding 
CPAT coding probability 6.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SEZ6L2-1:2 no no no no

Available literature

  1. Xing (2014), Identification of long noncoding RNA associated with osteoarthritis in humans., Orthop Surg


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-SEZ6L2-1:2
4.1 lnc-SEZ6L2-1:2
5.0 lnc-SEZ6L2-1:2
5.1 lnc-SULT1A2-53:2
5.2 lnc-SEZ6L2-1:2