Transcript: lnc-SGCE-1:5

Basic information

LNCipedia transcript ID: lnc-SGCE-1:5 
LNCipedia gene ID: lnc-SGCE-1
Ensembl Gene ID: ENSG00000285090
Ensembl Transcript ID: ENST00000642601
Location (hg19): chr7:93907992-94021508
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1026 bp
Exons: 9
Sources: Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000642601.1
Alternative gene names: ENSG00000285090.1; AC002074.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -82.9763 non-coding 
CPAT coding probability 1.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SGCE-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-PEX1-30:1
5.1 lnc-PEX1-30:1
5.2 lnc-SGCE-1:5