Transcript: lnc-SGK1-3:5

Basic information

LNCipedia transcript ID: lnc-SGK1-3:5 
LNCipedia gene ID: lnc-SGK1-3
Ensembl Gene ID: ENSG00000232310
Ensembl Transcript ID: ENST00000607531
Location (hg19): chr6:134846452-134855807
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 750 bp
Exons: 4
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000607531.1; ENST00000607531.5
Alternative gene names: ENSG00000232310.2; RP11-557H15.4; ENSG00000232310.6; AL078590.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -229.2951 non-coding 
CPAT coding probability 6.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SGK1-3:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SGK1-3:5
4.0 lnc-SGK1-3:5
4.1 lnc-SGK1-3:5
5.0 lnc-SGK1-3:5
5.1 lnc-OLIG3-65:15
5.2 lnc-SGK1-3:5