Transcript: lnc-SGPL1-131:1

Basic information

LNCipedia transcript ID: lnc-SGPL1-131:1 
LNCipedia gene ID: lnc-SGPL1-131
Ensembl Gene ID: ENSG00000285300
Ensembl Transcript ID: ENST00000646051
Location (hg19): chr10:72686812-72837567
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2199 bp
Exons: 5
Sources: Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000646051.1
Alternative gene names: ENSG00000285300.1; AC073176.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -87.4222 non-coding 
CPAT coding probability 37.53% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SGPL1-131:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-MTRNR2L5-131:1
5.1 lnc-MTRNR2L5-131:1
5.2 lnc-SGPL1-131:1