Transcript: lnc-SGSM3-3:1

Basic information

LNCipedia transcript ID: lnc-SGSM3-3:1 
LNCipedia gene ID: lnc-SGSM3-3
Ensembl Gene ID: ENSG00000272834
Ensembl Transcript ID: ENST00000609279
Location (hg19): chr22:40811007-40811449
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 443 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609279.1
Alternative gene names: ENSG00000272834.1; RP5-1042K10.13; AL022238.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -74.661 non-coding 
CPAT coding probability 0.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SGSM3-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SGSM3-3:1
4.0 lnc-SGSM3-3:1
4.1 lnc-SGSM3-3:1
5.0 lnc-SGSM3-3:1
5.1 lnc-XPNPEP3-12:1
5.2 lnc-SGSM3-3:1