Transcript: lnc-SGTB-6:1

Basic information

LNCipedia transcript ID: lnc-SGTB-6:1 
LNCipedia gene ID: lnc-SGTB-6
Location (hg19): chr5:65536708-65541030
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1649 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc003juq_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -31.5595 non-coding 
CPAT coding probability 44.89% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SGTB-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SGTB-6:1
4.0 lnc-SGTB-6:1
4.1 lnc-SGTB-6:1
5.0 lnc-SGTB-6:1
5.1 lnc-TRIM23-12:1
5.2 lnc-SGTB-6:1