Transcript: lnc-SH2B2-7:1

Basic information

LNCipedia transcript ID: lnc-SH2B2-7:1 
LNCipedia gene ID: lnc-SH2B2-7
Ensembl Gene ID: ENSG00000272219
Ensembl Transcript ID: ENST00000606640
Location (hg19): chr7:101603396-101605174
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1779 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000606640.1
Alternative gene names: ENSG00000272219.1; CTB-181H17.1; AC005072.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.2309 non-coding 
CPAT coding probability 8.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SH2B2-7:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SH2B2-7:1
4.0 lnc-SH2B2-7:1
4.1 lnc-SH2B2-7:1
5.0 lnc-SH2B2-7:1
5.1 lnc-SH2B2-7:1
5.2 lnc-SH2B2-7:1