Transcript: lnc-SH2D4A-2:7

Basic information

LNCipedia transcript ID: lnc-SH2D4A-2:7 
LNCipedia gene ID: lnc-SH2D4A-2
Location (hg19): chr8:18994188-19000241
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 315 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00015244
Alternative gene names: XLOC_006730; linc-SH2D4A-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.0853 non-coding 
CPAT coding probability 8.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SH2D4A-2:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SH2D4A-2:7
3.1 lnc-SH2D4A-2:7
4.0 lnc-SH2D4A-2:7
4.1 lnc-SH2D4A-2:7
5.0 lnc-SH2D4A-2:7
5.1 lnc-SH2D4A-2:7
5.2 lnc-SH2D4A-2:7