Transcript: lnc-SH3BGRL2-2:1

Basic information

LNCipedia transcript ID: lnc-SH3BGRL2-2:1 
LNCipedia gene ID: lnc-SH3BGRL2-2
Ensembl Gene ID: ENSG00000231533
Ensembl Transcript ID: ENST00000429444
Location (hg19): chr6:80130014-80131022
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 474 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000429444; ENST00000429444.1; RP1-232L24.3-001; OTTHUMT00000041307.1
Alternative gene names: ENSG00000231533; RP1-232L24.3; ENSG00000231533.1; OTTHUMG00000015079.1; AL078601.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -120.7651 non-coding 
CPAT coding probability 24.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SH3BGRL2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SH3BGRL2-2:1
3.1 lnc-SH3BGRL2-2:1
4.0 lnc-SH3BGRL2-2:1
4.1 lnc-SH3BGRL2-2:1
5.0 lnc-SH3BGRL2-2:1
5.1 lnc-CYB5R4-45:11
5.2 lnc-SH3BGRL2-2:1