Transcript: lnc-SH3D21-1:2

Basic information

LNCipedia transcript ID: lnc-SH3D21-1:2 
LNCipedia gene ID: lnc-SH3D21-1
Location (hg19): chr1:36916228-36917853
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1280 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000112861.1|MICT00000008076.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -14.1932 non-coding 
CPAT coding probability 1.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SH3D21-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AL591845.1-1:2
5.0 lnc-AL591845.1-1:2
5.1 lnc-NCDN-32:2
5.2 lnc-SH3D21-1:2