Transcript: lnc-SH3D21-2:1

Basic information

LNCipedia transcript ID: lnc-SH3D21-2:1 
LNCipedia gene ID: lnc-SH3D21-2
Location (hg19): chr1:37235456-37238931
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 236 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00000891; NONHSAT002426
Alternative gene names: XLOC_000144; linc-ZC3H12A-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -110.9161 non-coding 
CPAT coding probability 2.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SH3D21-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL591845.1-2:1
3.1 lnc-AL591845.1-2:1
4.0 lnc-AL591845.1-2:1
4.1 lnc-AL591845.1-2:1
5.0 lnc-AL591845.1-2:1
5.1 lnc-NCDN-38:1
5.2 lnc-SH3D21-2:1