Transcript: lnc-SH3D21-2:2

Basic information

LNCipedia transcript ID: lnc-SH3D21-2:2 
LNCipedia gene ID: lnc-SH3D21-2
Ensembl Gene ID: ENSG00000234481
Ensembl Transcript ID: ENST00000451375
Location (hg19): chr1:37238741-37241369
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 463 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000185; ENST00000451375.1; RP4-614N24.1-001; OTTHUMT00000012051.1; NONHSAT002427
Alternative gene names: XLOC_000144; linc-ZC3H12A-1; ENSG00000234481.1; RP4-614N24.1; OTTHUMG00000004187.1; AC117945.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -110.9161 non-coding 
CPAT coding probability 1.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SH3D21-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL591845.1-2:2
3.1 lnc-AL591845.1-2:2
4.0 lnc-AL591845.1-2:2
4.1 lnc-AL591845.1-2:2
5.0 lnc-AL591845.1-2:2
5.1 lnc-NCDN-38:2
5.2 lnc-SH3D21-2:2