Transcript: lnc-SH3D21-8:1

Basic information

LNCipedia transcript ID: lnc-SH3D21-8:1 
LNCipedia gene ID: lnc-SH3D21-8
Location (hg19): chr1:36863634-36865439
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1806 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000112575.1|ENCT00000004261.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 7.6016 non-coding 
CPAT coding probability 0.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SH3D21-8:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AL591845.1-8:1
5.0 lnc-AL591845.1-8:1
5.1 lnc-NCDN-31:1
5.2 lnc-SH3D21-8:1