Transcript: lnc-SH3GL3-5:3

Basic information

LNCipedia transcript ID: lnc-SH3GL3-5:3 
LNCipedia gene ID: lnc-SH3GL3-5
Ensembl Gene ID: ENSG00000259986
Ensembl Transcript ID: ENST00000565495
Location (hg19): chr15:83853557-84108197
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 290 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565495.1; RP11-382A20.4-003; OTTHUMT00000419906.1; NONHSAT047899
Alternative gene names: ENSG00000259986.1; RP11-382A20.4; OTTHUMG00000172686.1; AC103876.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -54.8378 non-coding 
CPAT coding probability 0.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SH3GL3-5:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TM6SF1-1:3
4.0 lnc-SH3GL3-5:3
4.1 lnc-SH3GL3-5:3
5.0 lnc-SH3GL3-5:3
5.1 lnc-SH3GL3-5:3
5.2 lnc-SH3GL3-5:3