Transcript: lnc-SHC3-2:1

Basic information

LNCipedia transcript ID: lnc-SHC3-2:1 
LNCipedia gene ID: lnc-SHC3-2
Ensembl Gene ID: ENSG00000228189
Ensembl Transcript ID: ENST00000544644
Location (hg19): chr9:91262094-91267075
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 682 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000544644; ENST00000544644.1; RP13-60M5.2-201
Alternative gene names: ENSG00000228189; RP13-60M5.2; ENSG00000228189.3; OTTHUMG00000020171.1; ENSG00000228189.4; AL592486.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -32.0446 non-coding 
CPAT coding probability 8.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SHC3-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SHC3-2:1
3.1 lnc-SHC3-2:1
4.0 lnc-SHC3-2:1
4.1 lnc-SHC3-2:1
5.0 lnc-SHC3-2:1
5.1 lnc-SEMA4D-21:3
5.2 lnc-SHC3-2:1