Transcript: lnc-SHC3-2:2

Basic information

LNCipedia transcript ID: lnc-SHC3-2:2 
LNCipedia gene ID: lnc-SHC3-2
Location (hg19): chr9:91242111-91267051
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1216 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000418343; ENST00000418343.1; RP13-60M5.2-001; OTTHUMT00000052976.1; NONHSAT132934
Alternative gene names: ENSG00000228189; RP13-60M5.2; ENSG00000228189.3; OTTHUMG00000020171.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -32.0446 non-coding 
CPAT coding probability 8.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SHC3-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SHC3-2:2
3.1 lnc-SHC3-2:2
4.0 lnc-SHC3-2:2
4.1 lnc-SHC3-2:2
5.0 lnc-SHC3-2:2
5.1 lnc-SEMA4D-21:4
5.2 lnc-SHC3-2:2