Transcript: lnc-SHCBP1L-1:9

Basic information

LNCipedia transcript ID: lnc-SHCBP1L-1:9 
LNCipedia gene ID: lnc-SHCBP1L-1
Location (hg19): chr1:182806697-182808350
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1183 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000085210.1|FTMT20100059637.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -14.1657 non-coding 
CPAT coding probability 2.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SHCBP1L-1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SHCBP1L-1:9
5.0 lnc-SHCBP1L-1:9
5.1 lnc-MYOG-172:8
5.2 lnc-SHCBP1L-1:9