Transcript: lnc-SHOC2-1:3

Basic information

LNCipedia transcript ID: lnc-SHOC2-1:3 
LNCipedia gene ID: lnc-SHOC2-1
Location (hg19): chr10:112779678-112782449
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 274 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00018817; NONHSAT016380
Alternative gene names: XLOC_008614; linc-ADRA2A-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -95.5676 non-coding 
CPAT coding probability 5.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SHOC2-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SHOC2-2:1
3.1 lnc-SHOC2-2:1
4.0 lnc-SHOC2-1:3
4.1 lnc-SHOC2-1:3
5.0 lnc-SHOC2-1:3
5.1 lnc-SMC3-16:3
5.2 lnc-SHOC2-1:3