Transcript: lnc-SHOX2-7:1

Basic information

LNCipedia transcript ID: lnc-SHOX2-7:1 
LNCipedia gene ID: lnc-SHOX2-7
Location (hg19): chr3:157993598-157994210
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 613 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT092924
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -22.8694 non-coding 
CPAT coding probability 50.08% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SHOX2-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SHOX2-7:1
4.0 lnc-SHOX2-7:1
4.1 lnc-SHOX2-7:1
5.0 lnc-SHOX2-7:1
5.1 lnc-SHOX2-7:1
5.2 lnc-SHOX2-7:1