Transcript: lnc-SHPRH-1:6

Basic information

LNCipedia transcript ID: lnc-SHPRH-1:6 
LNCipedia gene ID: lnc-SHPRH-1
Ensembl Gene ID: ENSG00000237468
Ensembl Transcript ID: ENST00000419168
RefSeq ID: NR_125860
Location (hg19): chr6:146915652-146920067
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2190 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT115426; ENST00000419168.2; NR_125860; NR_125860.1
Alternative gene names: ENSG00000237468.2; RP11-715G15.1; AL359547.1; LOC101928661


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -117.1129 non-coding 
CPAT coding probability 0.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SHPRH-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SHPRH-1:6
4.0 lnc-SHPRH-1:6
4.1 lnc-SHPRH-1:6
5.0 lnc-SHPRH-1:6
5.1 lnc-RAET1G-42:3
5.2 lnc-SHPRH-1:6