Transcript: lnc-SIK1-1:1

Basic information

LNCipedia transcript ID: lnc-SIK1-1:1 
LNCipedia gene ID: lnc-SIK1-1
Location (hg19): chr21:44810094-44810769
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 422 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00029160; NONHSAT082403
Alternative gene names: XLOC_014104; linc-U2AF1-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -38.2389 non-coding 
CPAT coding probability 13.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SIK1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SIK1-1:1
3.1 lnc-SIK1-1:1
4.0 lnc-SIK1-1:1
4.1 lnc-SIK1-1:1
5.0 lnc-SIK1-1:1
5.1 lnc-POFUT2-40:1
5.2 lnc-SIK1-1:1