Transcript: lnc-SIL1-3:6

Basic information

LNCipedia transcript ID: lnc-SIL1-3:6 
LNCipedia gene ID: lnc-SIL1-3
Location (hg19): chr5:138443696-138532217
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 547 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT104067
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -866.8868 non-coding 
CPAT coding probability 66.66% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SIL1-3:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC23A1-3:6
4.0 lnc-SIL1-3:6
4.1 lnc-SIL1-3:6
5.0 lnc-SIL1-3:6
5.1 lnc-DND1-45:6
5.2 lnc-SIL1-3:6