Transcript: lnc-SIMC1-5:1

Basic information

LNCipedia transcript ID: lnc-SIMC1-5:1 
LNCipedia gene ID: lnc-SIMC1-5
Location (hg19): chr5:175494719-175497412
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 698 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: l_3067_chr5:175494718-175497412_ovary
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.7441 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SIMC1-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C5orf25-5:1
4.0 lnc-C5orf25-5:1
4.1 lnc-C5orf25-5:1
5.0 lnc-C5orf25-5:1
5.1 lnc-ATP6V0E1-98:1
5.2 lnc-SIMC1-5:1