Transcript: lnc-SIPA1L3-3:19

Basic information

LNCipedia transcript ID: lnc-SIPA1L3-3:19 
LNCipedia gene ID: lnc-SIPA1L3-3
Location (hg19): chr19:38320191-38322797
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2607 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000443870; ENST00000443870.1; LOC147976-001; OTTHUMT00000109621.1; NONHSAT066170
Alternative gene names: ENSG00000229481; AC016582.1; ENSG00000229481.1; LOC147976; OTTHUMG00000048188.1; CTD-2554C21.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.1349 non-coding 
CPAT coding probability 6.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SIPA1L3-3:19 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SIPA1L3-1:1
3.1 lnc-SIPA1L3-1:1
4.0 lnc-SIPA1L3-1:1
4.1 lnc-SIPA1L3-3:19
5.0 lnc-SIPA1L3-3:19
5.1 lnc-ZNF540-9:1
5.2 lnc-SIPA1L3-3:19