Transcript: lnc-SIPA1L3-6:17

Basic information

LNCipedia transcript ID: lnc-SIPA1L3-6:17 
LNCipedia gene ID: lnc-SIPA1L3-6
Location (hg19): chr19:38308566-38317215
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 567 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: NONHSAT066168; ENST00000586819.1
Alternative gene names: ENSG00000267640.1; CTD-2554C21.2; ENSG00000267640.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.0082 non-coding 
CPAT coding probability 6.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SIPA1L3-6:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SIPA1L3-3:6
4.0 lnc-SIPA1L3-3:6
4.1 lnc-SIPA1L3-3:6
5.0 lnc-SIPA1L3-3:6
5.1 lnc-ZNF540-10:17
5.2 lnc-SIPA1L3-6:17