Transcript: lnc-SIX2-1:4

Basic information

LNCipedia transcript ID: lnc-SIX2-1:4 
LNCipedia gene ID: lnc-SIX2-1
Location (hg19): chr2:45240298-45241701
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1404 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000231156.1|ENCT00000241475.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -480.7661 non-coding 
CPAT coding probability 26.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SIX2-1:4 no no no no

Available literature

  1. Yang (2015), Genome-wide analysis of long noncoding RNA profile in human gastric epithelial cell response to Helicobacter pylori., Jpn. J. Infect. Dis.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SIX2-1:4
5.0 lnc-SIX2-1:4
5.1 lnc-ATP6V1E2-21:3
5.2 lnc-SIX2-1:4