Transcript: lnc-SKA2-8:1

Basic information

LNCipedia transcript ID: lnc-SKA2-8:1 
LNCipedia gene ID: lnc-SKA2-8
Location (hg19): chr17:57436016-57436321
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 306 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: expReg_chr17_10636_-
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.4014 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SKA2-8:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SKA2-8:1
4.0 lnc-SKA2-8:1
4.1 lnc-SKA2-8:1
5.0 lnc-SKA2-8:1
5.1 lnc-PTRH2-8:1
5.2 lnc-SKA2-8:1