Transcript: lnc-SKIL-1:2

Basic information

LNCipedia transcript ID: lnc-SKIL-1:2 
LNCipedia gene ID: lnc-SKIL-1
Ensembl Gene ID: ENSG00000239628
Ensembl Transcript ID: ENST00000466291
Location (hg19): chr3:170063466-170071749
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 469 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005656; ENST00000466291; ENST00000466291.1; RP11-543D10.2-001; OTTHUMT00000352343.1; NONHSAT093194
Alternative gene names: XLOC_002918; linc-SKIL; ENSG00000239628; RP11-543D10.2; ENSG00000239628.1; OTTHUMG00000158828.1; AC073288.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -24.2895 non-coding 
CPAT coding probability 1.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SKIL-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SKIL-1:2
3.1 lnc-SKIL-1:2
4.0 lnc-SKIL-1:2
4.1 lnc-SKIL-1:2
5.0 lnc-SKIL-1:2
5.1 lnc-LRRIQ4-15:2
5.2 lnc-SKIL-1:2