Transcript: lnc-SLC11A2-7:1

Basic information

LNCipedia transcript ID: lnc-SLC11A2-7:1 
LNCipedia gene ID: lnc-SLC11A2-7
Location (hg19): chr12:51154269-51157722
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3454 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000011925.1|FTMT24600002245.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 28.1609 non-coding 
CPAT coding probability 0.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC11A2-7:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SLC11A2-7:1
5.0 lnc-SLC11A2-7:1
5.1 lnc-FAM186A-7:1
5.2 lnc-SLC11A2-7:1