Transcript: lnc-SLC12A7-1:17

Basic information

LNCipedia transcript ID: lnc-SLC12A7-1:17 
LNCipedia gene ID: lnc-SLC12A7-1
Location (hg19): chr5:1041109-1050423
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2668 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc003jbs_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.1739 non-coding 
CPAT coding probability 1.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC12A7-1:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC12A7-1:17
4.0 lnc-SLC12A7-1:17
4.1 lnc-SLC12A7-1:17
5.0 lnc-SLC12A7-1:17
5.1 lnc-IRX2-27:1
5.2 lnc-SLC12A7-1:17