Transcript: lnc-SLC12A7-4:4

Basic information

LNCipedia transcript ID: lnc-SLC12A7-4:4 
LNCipedia gene ID: lnc-SLC12A7-4
Location (hg19): chr5:987295-990738
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3444 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000543306.1; RP11-43F13.3-201; NONHSAT099948
Alternative gene names: ENSG00000215246.4; RP11-43F13.3; OTTHUMG00000161930.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.6639 non-coding 
CPAT coding probability 10.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC12A7-4:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC12A7-4:4
4.0 lnc-SLC12A7-4:4
4.1 lnc-SLC12A7-4:4
5.0 lnc-SLC12A7-4:4
5.1 lnc-IRX2-29:10
5.2 lnc-SLC12A7-4:4