Transcript: lnc-SLC12A7-4:5

Basic information

LNCipedia transcript ID: lnc-SLC12A7-4:5 
LNCipedia gene ID: lnc-SLC12A7-4
RefSeq ID: NR_104615
Location (hg19): chr5:987292-997455
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3451 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_104615; NR_104615.1
Alternative gene names: LOC100506688


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.6639 non-coding 
CPAT coding probability 10.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC12A7-4:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC12A7-4:5
4.0 lnc-SLC12A7-4:5
4.1 lnc-SLC12A7-4:5
5.0 lnc-SLC12A7-4:5
5.1 lnc-IRX2-29:2
5.2 lnc-SLC12A7-4:5