Transcript: lnc-SLC15A5-1:1

Basic information

LNCipedia transcript ID: lnc-SLC15A5-1:1 
LNCipedia gene ID: lnc-SLC15A5-1
Location (hg19): chr12:15966427-15981208
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 417 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000545999; ENST00000545999.1; RP11-6B19.2-001; OTTHUMT00000401110.1; NONHSAT027127
Alternative gene names: ENSG00000256953; RP11-6B19.2; ENSG00000256953.1; OTTHUMG00000168790.1; AC073651.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -119.9063 non-coding 
CPAT coding probability 9.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC15A5-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC15A5-1:1
3.1 lnc-SLC15A5-1:1
4.0 lnc-SLC15A5-1:1
4.1 lnc-SLC15A5-1:1
5.0 lnc-SLC15A5-1:1
5.1 lnc-WBP11-17:1
5.2 lnc-SLC15A5-1:1