Transcript: lnc-SLC16A8-2:1

Basic information

LNCipedia transcript ID: lnc-SLC16A8-2:1 
LNCipedia gene ID: lnc-SLC16A8-2
Ensembl Gene ID: ENSG00000222044
Ensembl Transcript ID: ENST00000410099
Location (hg19): chr22:38428172-38430235
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1055 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00029482; ENST00000410099.1; RP5-1039K5.16-001; OTTHUMT00000331452.2; NONHSAT086651
Alternative gene names: XLOC_014371; linc-SOX10; ENSG00000222044.1; RP5-1039K5.16; OTTHUMG00000153513.2; AL031587.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -32.7436 non-coding 
CPAT coding probability 22.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC16A8-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC16A8-1:1
3.1 lnc-SLC16A8-2:1
4.0 lnc-SLC16A8-2:1
4.1 lnc-SLC16A8-2:1
5.0 lnc-SLC16A8-2:1
5.1 lnc-MYH9-40:1
5.2 lnc-SLC16A8-2:1