Transcript: lnc-SLC16A9-1:6

Basic information

LNCipedia transcript ID: lnc-SLC16A9-1:6 
LNCipedia gene ID: lnc-SLC16A9-1
Location (hg19): chr10:61496956-61504622
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 281 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT013532; ENST00000599605.1
Alternative gene names: ENSG00000227877.2; LINC00948


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.038 non-coding 
CPAT coding probability 5.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC16A9-1:6 no no no no

Available literature

  1. Anderson (2015), A micropeptide encoded by a putative long noncoding RNA regulates muscle performance., Cell
  2. Hou (2014), Long noncoding RNAs expression patterns associated with chemo response to cisplatin based chemotherapy in lung squamous cell carcinoma patients., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC16A9-1:6
4.0 lnc-SLC16A9-1:6
4.1 lnc-SLC16A9-1:6
5.0 lnc-SLC16A9-1:6
5.1 lnc-MBL2-28:9
5.2 lnc-SLC16A9-1:6