Transcript: lnc-SLC19A1-5:3

Basic information

LNCipedia transcript ID: lnc-SLC19A1-5:3 
LNCipedia gene ID: lnc-SLC19A1-5
Location (hg19): chr21:47009495-47010499
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1005 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000057011.1|ENCT00000275699.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 2.4433 non-coding 
CPAT coding probability 16.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC19A1-5:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SLC19A1-5:3
5.0 lnc-SLC19A1-5:3
5.1 lnc-SLC19A1-5:3
5.2 lnc-SLC19A1-5:3