Transcript: lnc-SLC19A2-1:2

Basic information

LNCipedia transcript ID: lnc-SLC19A2-1:2 
LNCipedia gene ID: lnc-SLC19A2-1
Location (hg19): chr1:169423629-169429659
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 427 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000437857.1; RP1-206D15.3-002; OTTHUMT00000086103.1; NONHSAT007462
Alternative gene names: ENSG00000234437.1; RP1-206D15.3; OTTHUMG00000035449.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -193.6963 non-coding 
CPAT coding probability 0.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC19A2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC19A2-1:2
4.0 lnc-SLC19A2-1:2
4.1 lnc-SLC19A2-1:2
5.0 lnc-SLC19A2-1:2
5.1 lnc-SH2D1B-82:2
5.2 lnc-SLC19A2-1:2