Transcript: lnc-SLC19A3-3:4

Basic information

LNCipedia transcript ID: lnc-SLC19A3-3:4 
LNCipedia gene ID: lnc-SLC19A3-3
Location (hg19): chr2:228645159-228648281
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2721 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000051777.1|ENCT00000254531.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 14.9896 non-coding 
CPAT coding probability 7.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC19A3-3:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SLC19A3-3:4
5.0 lnc-SLC19A3-3:4
5.1 lnc-HTR2B-33:4
5.2 lnc-SLC19A3-3:4