Transcript: lnc-SLC1A1-1:1

Basic information

LNCipedia transcript ID: lnc-SLC1A1-1:1 
LNCipedia gene ID: lnc-SLC1A1-1
Ensembl Gene ID: ENSG00000228322
Ensembl Transcript ID: ENST00000440674
Location (hg19): chr9:4299390-4306046
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 873 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000440674; ENST00000440674.1; RP11-358M14.2-001; OTTHUMT00000051563.1
Alternative gene names: ENSG00000228322; RP11-358M14.2; ENSG00000228322.1; OTTHUMG00000019464.1; AL162419.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -151.7995 non-coding 
CPAT coding probability 1.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC1A1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC1A1-1:1
3.1 lnc-SLC1A1-1:1
4.0 lnc-SLC1A1-1:1
4.1 lnc-SLC1A1-1:1
5.0 lnc-SLC1A1-1:1
5.1 lnc-RECK-278:6
5.2 lnc-SLC1A1-1:1