Transcript: lnc-SLC1A1-3:1

Basic information

LNCipedia transcript ID: lnc-SLC1A1-3:1 
LNCipedia gene ID: lnc-SLC1A1-3
Ensembl Gene ID: ENSG00000236724
Ensembl Transcript ID: ENST00000422150
Location (hg19): chr9:3875584-3878809
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 243 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000422150.1; RP11-252M18.3-001; OTTHUMT00000331458.1; NONHSAT130038
Alternative gene names: ENSG00000236724.1; RP11-252M18.3; OTTHUMG00000153514.1; AL137071.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 11.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC1A1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC1A1-3:1
4.0 lnc-SLC1A1-3:1
4.1 lnc-SLC1A1-3:1
5.0 lnc-SLC1A1-3:1
5.1 lnc-RECK-280:1
5.2 lnc-SLC1A1-3:1