Transcript: lnc-SLC1A2-2:4

Basic information

LNCipedia transcript ID: lnc-SLC1A2-2:4 
LNCipedia gene ID: lnc-SLC1A2-2
RefSeq ID: NR_120528
Location (hg19): chr11:35154197-35159579
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1107 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_120528; NR_120528.1
Alternative gene names: LOC100507144


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -148.4838 non-coding 
CPAT coding probability 9.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC1A2-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC1A2-2:4
4.0 lnc-SLC1A2-2:4
4.1 lnc-SLC1A2-2:4
5.0 lnc-SLC1A2-2:4
5.1 lnc-TRAF6-16:4
5.2 lnc-SLC1A2-2:4