Transcript: lnc-SLC1A2-2:5

Basic information

LNCipedia transcript ID: lnc-SLC1A2-2:5 
LNCipedia gene ID: lnc-SLC1A2-2
Location (hg19): chr11:35150431-35160563
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1637 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000255521.1|HBMT00000244974.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -73.9896 non-coding 
CPAT coding probability 0.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC1A2-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SLC1A2-2:5
5.0 lnc-SLC1A2-2:5
5.1 lnc-TRAF6-16:1
5.2 lnc-SLC1A2-2:5