Transcript: lnc-SLC22A18-10:1

Basic information

LNCipedia transcript ID: lnc-SLC22A18-10:1 
LNCipedia gene ID: lnc-SLC22A18-10
Ensembl Gene ID: ENSG00000224513
Ensembl Transcript ID: ENST00000418995
Location (hg19): chr11:3247291-3254068
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 435 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000418995.2; AC109309.4-001; OTTHUMT00000032348.2; NONHSAT017573
Alternative gene names: ENSG00000224513.2; AC109309.4; OTTHUMG00000011710.2; AC109309.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -205.9055 non-coding 
CPAT coding probability 7.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC22A18-10:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C11orf36-1:1
4.0 lnc-C11orf36-1:1
4.1 lnc-C11orf36-1:1
5.0 lnc-C11orf36-1:1
5.1 lnc-OR51M1-58:1
5.2 lnc-SLC22A18-10:1