Transcript: lnc-SLC22A18-1:1

Basic information

LNCipedia transcript ID: lnc-SLC22A18-1:1 
LNCipedia gene ID: lnc-SLC22A18-1
Location (hg19): chr11:2965668-2966753
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 548 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000439505.2; AC131971.3-002; OTTHUMT00000385374.1; NONHSAT017538
Alternative gene names: ENSG00000224636.2; AC131971.3; OTTHUMG00000011695.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -135.2242 non-coding 
CPAT coding probability 8.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC22A18-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC22A18-1:1
4.0 lnc-SLC22A18-1:1
4.1 lnc-SLC22A18-1:1
5.0 lnc-SLC22A18-1:1
5.1 lnc-OR51M1-62:1
5.2 lnc-SLC22A18-1:1