Transcript: lnc-SLC22A31-3:1

Basic information

LNCipedia transcript ID: lnc-SLC22A31-3:1 
LNCipedia gene ID: lnc-SLC22A31-3
Ensembl Gene ID: ENSG00000261692
Ensembl Transcript ID: ENST00000567166
Location (hg19): chr16:89486483-89488634
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 415 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000567166.1; RP1-168P16.1-001; OTTHUMT00000431801.1; NONHSAT144525
Alternative gene names: ENSG00000261692.1; RP1-168P16.1; OTTHUMG00000176348.1; AC092120.2; AC092120.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -95.8185 non-coding 
CPAT coding probability 17.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC22A31-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CHMP1A-1:1
4.0 lnc-CHMP1A-1:1
4.1 lnc-CHMP1A-1:1
5.0 lnc-CHMP1A-1:1
5.1 lnc-KLHDC4-51:1
5.2 lnc-SLC22A31-3:1