Transcript: lnc-SLC22A31-5:1

Basic information

LNCipedia transcript ID: lnc-SLC22A31-5:1 
LNCipedia gene ID: lnc-SLC22A31-5
Location (hg19): chr16:89281638-89284061
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2424 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000570267.1; RP11-46C24.7-001; OTTHUMT00000430650.1; NONHSAT144484
Alternative gene names: ENSG00000259877.1; RP11-46C24.7; OTTHUMG00000175616.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 74.8967 coding 
CPAT coding probability 30.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SLC22A31-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ANKRD11-5:1
4.0 lnc-ANKRD11-5:1
4.1 lnc-ANKRD11-5:1
5.0 lnc-ANKRD11-5:1
5.1 lnc-KLHDC4-46:1
5.2 lnc-SLC22A31-5:1