Transcript: lnc-SLC22A31-5:2

Basic information

LNCipedia transcript ID: lnc-SLC22A31-5:2 
LNCipedia gene ID: lnc-SLC22A31-5
Ensembl Gene ID: ENSG00000259877
Ensembl Transcript ID: ENST00000570267
Location (hg19): chr16:89281619-89284061
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2443 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000570267.2
Alternative gene names: ENSG00000259877.2; RP11-46C24.7; AC009113.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 74.8967 coding 
CPAT coding probability 30.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SLC22A31-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ANKRD11-5:2
4.1 lnc-ANKRD11-5:2
5.0 lnc-ANKRD11-5:2
5.1 lnc-KLHDC4-46:2
5.2 lnc-SLC22A31-5:2